Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7630983 chr3:80600966 T/A 0.000178 177 19.53 23.53 27.4 KM Plot
PCPG rs7630997 chr3:80601016 T/A 0.000178 177 19.53 23.53 27.4 KM Plot
PCPG rs7631127 chr3:80574242 C/T 6.66E-5 177 19.53 24.03 27.2 KM Plot
PCPG rs76315806 chr5:179485515 C/G 1.56E-5 173 24.5 29.57 25.17 KM Plot
PCPG rs7631866 chr3:80575042 C/A 6.66E-5 177 19.53 24.03 27.2 KM Plot
PCPG rs7631989 chr3:80574981 G/T 6.66E-5 177 19.53 24.03 27.2 KM Plot
PCPG rs76320230 chr16:89821730 TGCC/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs7632838 chr3:182625777 T/A 1.06E-5 174 25.87 27.2 11.78 KM Plot
PCPG rs76335881 chr15:39747238 A/T 0.000437 177 25 26.47 26.33 KM Plot
PCPG rs76335892 chr2:118845948 G/A 1.58E-5 178 25.08 29.1 11.65 KM Plot
PCPG rs7634792 chr3:115556153 T/C 9.33E-6 178 25.4 25.53 13.75 KM Plot
PCPG rs7634813 chr3:115556209 A/G 9.33E-6 178 25.4 25.53 13.75 KM Plot
PCPG rs76354454 chr22:50206573 G/A 0.000162 175 25.77 24.23 15.18 KM Plot
PCPG rs7636956 chr3:136663041 A/G 0.000469 177 22.15 27.33 23.03 KM Plot
PCPG rs76383317 chr17:1441660 G/T 1.5E-5 174 25.4 25.87 13.18 KM Plot